Gastrulation involves a series of cell migrations to positions where they will form the three primary cell layers.
- Ectoderm forms the outer layer.
- Endoderm forms the inner layer.
- Mesoderm forms the middle layer.
Ectoderm
Ectoderm forms tissues associated with outer layers: skin, hair, sweat glands, epithelium. The brain and nervous system also develop from the ectoderm.
Mesoderm
The mesoderm forms structures associated with movement and support: body muscles, cartilage, bone, blood, and all other connective tissues. Reproductive system organs and kidneys form from mesoderm.
Endoderm
The endoderm forms tissues and organs associated with the digestive and respiratory systems. Many endocrine structures, such as the thyroid and parathyroid glands, are formed by the endoderm. The liver, pancreas, and gall bladder arise from endoderm.
Invagination
Immediately after gastrulation, the body axis of the embryo begins to appear. Chordates have the cells that will form the nervous system fold into a neural tube (which will eventually form the spinal cord). The mesoderm forms the notochord (which will eventually form the vertebrae). The mesoderm at this time forms somites, which form segmented body parts, such as the muscles of the body wall.


Blastulation and gastrulation establish the main body axis. Organ formation occurs in the next stage of the development of the embryo. During organ formation, cell division is accomplished by migration and aggregation.
Pattern formation is the result of cells "sensing" their position in the embryo relative to other cells and to form structures appropriate to that position. Gradients of informational molecules within the embryo have been suggested to provide the positional information to cells. Homeobox genes are pattern genes; they coordinate with gradients of information molecules to establish the body plan and development of organs.
Induction is the process in which one cell or tissue type affects the developmental fate of another cell or tissue. As a cell begins to form certain structures, certain genes are turned on, others are turned off. Induction affects patterns of gene expression through physical contact or chemical signals. Formation of the vertebrate eye is a well known example.
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